Publications | CPPL

2024

Lee, J. H., Lee, U., Yoo, J. H., Lee, T. S., Jung, J. H., & Kim, H. S. (2024). AraDQ: an automated digital phenotyping software for quantifying disease symptoms of flood-inoculated Arabidopsis seedlings. Plant Methods, 20, 1-14. https://doi.org/10.1186/s13007-024-01171-w

2023
Yang, H. W., Lee, J. H., & Zhao, Y. (2023). RpoN regulon in Erwinia amylovora revealed by transcriptional profiling and in silico binding site analysis. Phytopathology, 113, 183-193. https://doi.org/10.1094/PHYTO-07-22-0255-R

Lee, S., Won, H. J., Ban, S., Park, Y. J., Kim, S. M., Kim, H. S., Choi, J., Kim, H. Y., Lee, J. H.* & Jung, J. H.* (2023). Integrative analysis of metabolite and transcriptome reveals biosynthetic pathway and candidate genes for eupatilin and jaceosidin biosynthesis in Artemisia argyi. Frontiers in Plant Science, 14, 1186023. https://doi.org/10.3389/fpls.2023.1186023

Lim, Y., Kim, J. Y., Jung, Y. H., Lee, J. H., Baek, M. S., Jung, J. H., Kim, H. Y., Lee, W., Park, K., & Seo, M. H. (2023). Q-SHINE: A versatile sensor for glutamine measurement via ligand-induced dimerization. Sensors and Actuators B: Chemical, 390, 133951. https://doi.org/10.1016/j.snb.2023.133951

Kang, I. J., Park, Y., Roh, E., & Lee, J. H. (2023). Novel single nucleotide variations alter pathogenicity in Korean isolates of Erwinia amylovora. Plant Disease. https://doi.org/10.1094/PDIS-09-23-1836-SC

2021

Lee, J. H., Won, H. J., Tran, P. H. N., Lee, S. M., Kim, H. Y., & Jung, J. H. (2021) Improving lignocellulosic biofuel production by CRISPR/Cas9-mediated lignin modification in barley. GCB Bioenergy, 13, 742-752. https://doi.org/10.1111/gcbb.12808

2020
Lee, J. H., Won, H. J., Oh, E. S., Oh, M. H., & Jung, J. H. (2020) Golden Gate cloning-compatible DNA replicon/2A-mediated polycistronic vectors systems for plants. Frontiers in Plant Science, 11, 559365. https://doi.org/10.3389/fpls.2020.559365

Ko, J. K.*, Lee, J. H.*, Jung, J. H.*, & Lee, S. M. (2020) Recent advances and future directions in plant and yeast engineering to improve lignocellulosic biofuel production. Renewable and Sustainable Energy Reviews, 134, 110390. https://doi.org/10.1016/j.rser.2020.110390

Liu, J., Yu, M., Chatnaparat, T., Lee, J. H., Tian, Y., Hu, B., & Zhao, Y. (2020). Comparative transcriptomic analysis of global gene expression mediated by (p) ppGpp reveals common regulatory networks in Pseudomonas syringae. BMC genomics, 21, 1-18. https://doi.org/10.1186/s12864-020-6701-2

Yang, H. W., Yu, M., Lee, J. H., Chatnaparat, T., & Zhao, Y. (2020). The stringent response regulator (p)ppGpp mediates virulence gene expression and survival in Erwinia amylovora. BMC genomics, 21, 1-19. https://doi.org/10.1186/s12864-020-6699-5

Lee, J. H., Kwak, G., Lim, Y. P., & Oh, M. H. (2020). 14-3-3 proteins contribute to leaf and root development via brassinosteroid insensitive 1 in Arabidopsis thaliana. Genes & Genomics, 42(3), 347-354. https://doi.org/10.1007/s13258-019-00909-4

Won, H. J.*, Lee, J. H.*, Ahn, H. R., Jung, S. H., and Jung, J. H. (2020) A preliminary open-field study investigating commercial smart farming of a potential alternative crop, Aster koraiensis. The Horticulture Journal, 89(3), 244-250. https://doi.org/10.2503/hortj.UTD-093

2019
Lee, J. H., Ancona, V., Tiyakhon, C., and Zhao, Y. (2019) The RNA-binding protein CsrA controls virulence in Erwinia amylovora by regulating FlhD, RcsB and RelA at the posttranscriptional level. Molecular Plant-Microbe Interaction, 32(10), 1448-1459. https://doi.org/10.1094/MPMI-03-19-0077-R

Ge, Y., Lee, J. H., Liu, J., Yang, H., Tian, Y., Hu, B., and Zhao, Y. (2019) Homologues of the RNA binding protein RsmA in Pseudomonas syringae pv. tomato DC3000 exhibit distinct binding affinities with non-coding small RNAs and have distinct roles in virulence. Molecular Plant Pathology, 20(9), 1217-1236. https://doi.org/10.1111/mpp.12823

Lee, J. H., Kim, H., Chae, W. B., and Oh, M. H. (2019) Pattern recognition receptors and their interactions with bacterial type III effectors in plants. Genes & genomics, 1-8. https://doi.org/10.1007/s13258-019-00801-1

2018
Ge, Y.*, Lee, J. H.*, Hu, B., and Zhao, Y. (2018) Loss-of-function mutations in the Dpp and Opp permeases render Erwinia amylovora resistant to kasugamycin and blasticidin S. Molecular Plant-Microbe Interactions, 31(8), 823-832. https://doi.org/10.1094/MPMI-01-18-0007-R

Lee, J. H., Ancona, V. and Zhao, Y. (2018) Lon protease regulates virulence traits in Erwinia amylovora by directly monitoring major regulators and indirectly through the Rcs and Gac-Csr regulatory systems. Molecular Plant Pathology, 19(4), 827-840. https://doi.org/10.1111/mpp.12566

Lee, J. H. and Zhao, Y. (2018) Integration of multiple stimuli-sensing systems to regulate HrpS and type III secretion system in Erwinia amylovora. Molecular Genetics and Genomics, 293, 187-196. https://doi.org/10.1007/s00438-017-1376-3

2017
Lee, J. H. and Zhao, Y. (2017) ClpXP-dependent RpoS degradation enables full activation of type III secretion system, amylovoran production and motility in Erwinia amylovora. Phytopathology, 107(11), 1346-1352. https://doi.org/10.1094/PHYTO-06-17-0198-R

Singh, V., Perraki, A., Kim, S. Y., Lee, J. H., Zhao, Y., Oh, M., Marshall-Colon, A., Zipfel, C. and Huber, S. C. (2017) Tyrosine-610 in the receptor kinase BAK1 does not play a major role in brassinosteroid signaling or innate immunity. Frontiers in Plant Science, 8, 1273. https://doi.org/10.3389/fpls.2017.01273

2016
Ancona, V., Lee, J. H. and Zhao, Y. (2016) The RNA-binding protein CsrA plays a central role in positively regulating virulence factors in Erwinia amylovora. Scientific Reports, 6, 37195. https://doi.org/10.1038/srep37195

Lee, J. H., Sundin, G. and Zhao, Y. (2016) Identification of the HrpS binding site in the hrpL promoter and effect of the RpoN binding site of HrpS in regulation of the type III secretion system in Erwinia amylovora. Molecular Plant Pathology, 17, 691-702. https://doi.org/10.1111/mpp.12324

Lee, J. H. and Zhao, Y. (2016) Integration host factor is required for RpoN-dependent hrpL gene expression and controls motility by positively regulating rsmB sRNA in Erwinia amylovora. Phytopathology, 106(1), 29-36. https://doi.org/10.1094/PHYTO-07-15-0170-R

2015

Ancona, V., Lee, J. H., Chatnaparat, T., Oh, J., Hong, J. I. and Zhao, Y. (2015) The Bacterial Alarmone (p)ppGpp Activates the Type III Secretion System in Erwinia amylovora. Journal of Bacteriology, 197(8), 1433-1443. https://doi.org/10.1128/JB.02551-14

2014
Ivanova, A., Law, S. R., Narsai, R., Duncan, O., Lee, J. H., Zhang, B. Van Aken, O. Radomiljac, J.D., van der Merwe, M., Yi, K. and Whelan, J. (2014) A functional antagonistic relationship between auxin and mitochondrial retrograde signaling regulates Alternative Oxidase1a expression in Arabidopsis. Plant Physiology, 165(3), 1233-1254. https://doi.org/10.1104/pp.114.237495